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    LOC4323879 uncharacterized LOC4323879 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323879, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4323879
    Gene description
    uncharacterized LOC4323879
    Locus tag
    OSNPB_010179500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4323879 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (4152925..4160624)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (4142409..4150445)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein DDB_G0286299 Neighboring gene Protein SUBSTANDARD STARCH GRAIN 4, chloroplastic Neighboring gene UDP-glycosyltransferase 75C1 Neighboring gene uncharacterized LOC136357498

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuA4 histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of piccolo histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4323879
    Names
    Os01g0179500
    P0406H10.21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      4152925..4160624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761039.3 → XP_015616525.1  uncharacterized protein LOC4323879

      UniProtKB/TrEMBL
      A2ZPY0
      Conserved Domains (2) summary
      pfam10513
      Location:1132 → 1219
      EPL1; Enhancer of polycomb-like
      cd20404
      Location:333 → 380
      Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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