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    LOC4336446 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336446, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336446
    Gene description
    large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic
    Locus tag
    OSNPB_040525000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336446 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26761101..26763030, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (26257973..26260063, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable metal-nicotianamine transporter YSL12 Neighboring gene probable metal-nicotianamine transporter YSL11 Neighboring gene UDP-glycosyltransferase 82A1 Neighboring gene uncharacterized LOC4336449

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic
    Names
    Os04g0525000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26761101..26763030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780296.3 → XP_015635782.1  large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WCQ5, A2XVP2, A3AVP9, Q01HQ8, Q7XKK5
      Conserved Domains (1) summary
      pfam02620
      Location:141 → 254
      DUF177; Uncharacterized ACR, COG1399
    Nucleotide Protein
    Heading Accession and Version

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