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    LOC4324596 putative pentatricopeptide repeat-containing protein At3g25970 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324596, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324596
    Gene description
    putative pentatricopeptide repeat-containing protein At3g25970
    Locus tag
    OSNPB_010600400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 9.7), leaves before flowering (RPKM 8.7) and 6 other tissues See more
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    Genomic context

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    See LOC4324596 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (24155764..24160646)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23580670..23585652)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B Neighboring gene uncharacterized LOC4324595 Neighboring gene thiamine phosphate phosphatase-like protein Neighboring gene septin and tuftelin-interacting protein 1 homolog 1 Neighboring gene chlorophyll a-b binding protein 2, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative pentatricopeptide repeat-containing protein At3g25970
    Names
    Os01g0600400
    P0025A05.40
    P0518F01.11
    pentatricopeptide (PPR) repeat-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      24155764..24160646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758461.3 → XP_015613947.1  putative pentatricopeptide repeat-containing protein At3g25970

      UniProtKB/TrEMBL
      B8AB74
      Conserved Domains (4) summary
      TIGR00756
      Location:633 → 665
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:633 → 659
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:90 → 122
      PPR_1; PPR repeat
      pfam13041
      Location:629 → 677
      PPR_2; PPR repeat family

    2. XM_015758449.3 → XP_015613935.1  putative pentatricopeptide repeat-containing protein At3g25970

      UniProtKB/TrEMBL
      B8AB74
      Conserved Domains (4) summary
      TIGR00756
      Location:633 → 665
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:633 → 659
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:90 → 122
      PPR_1; PPR repeat
      pfam13041
      Location:629 → 677
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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