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    LOC4329381 40S ribosomal protein S8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329381, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329381
    Gene description
    40S ribosomal protein S8-like
    Locus tag
    OSNPB_020489400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RPS8; OsJ_06781
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    Genomic context

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    See LOC4329381 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (17496319..17498889)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (17035569..17038108)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355252 Neighboring gene uncharacterized LOC136355085 Neighboring gene uncharacterized LOC4329382 Neighboring gene probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of a rice cDNA encoding a homolog of the eukaryotic ribosomal protein S8. Nakamura I, et al. Plant Physiol, 1995 Apr. PMID 7770536, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS8
    Names
    40S ribosomal protein S8
    LOC_Os02g28810
    OSJNBa0048K16.2
    P0483C08.42
    putative 40S ribosomal protein S8
    ribosomal protein S8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416611.1 → NP_001403540.1  small ribosomal subunit protein eS8

      Status: VALIDATED

      Source sequence(s)
      CF321368, CI216467, CI638048
      UniProtKB/Swiss-Prot
      P49199, Q0E158, Q6K771
      UniProtKB/TrEMBL
      B8AHZ6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      17496319..17498889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P49199.2 GenPept UniProtKB/Swiss-Prot:P49199

    Gene LinkOut

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