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    LOC9272622 copper transport protein ATX1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272622, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9272622
    Gene description
    copper transport protein ATX1
    Locus tag
    OSNPB_020530100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsATX1
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    Genomic context

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    See LOC9272622 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19950131..19951426, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19472230..19473706, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ent-isokaurene C2/C3-hydroxylase-like Neighboring gene pentatricopeptide repeat-containing protein At4g13650 Neighboring gene uncharacterized LOC107279893 Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OsATX1 Interacts with Heavy Metal P1B-Type ATPases and Affects Copper Transport and Distribution. Zhang Y, et al. Plant Physiol, 2018 Sep. PMID 30002257, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copper transport protein ATX1
    Names
    Os02g0530100
    P0476H10.30-1
    P0476H10.30-2
    copper chaperone homolog CCH
    putative copper chaperone

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      19950131..19951426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767272.3 → XP_015622758.1  copper transport protein ATX1

      UniProtKB/TrEMBL
      A0A0P0VJT6, A2X5L0, A3A7K7, Q6H759, Q9SE04
      Conserved Domains (1) summary
      cd00371
      Location:11 → 66
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    Nucleotide Protein
    Heading Accession and Version

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