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    LOC4329722 oryzalexin D synthase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329722, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4329722
    Gene description
    oryzalexin D synthase-like
    Locus tag
    OSNPB_020569400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CYP76M8; OsJ_07203
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    Genomic context

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    See LOC4329722 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22170892..22172699)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21690359..21692245)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 76M5-like Neighboring gene uncharacterized LOC136355071 Neighboring gene ent-cassadiene C11-alpha-hydroxylase 1-like Neighboring gene uncharacterized LOC107279928

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oryzalexin D synthase
    Names
    Cytochrome P450 76M8
    Ent-cassadiene C11-alpha-hydroxylase 2
    LOC_Os02g36070
    OSJNBa0008E01.2
    P0025F02.31
    cytochrome P450 family protein
    putative Cyt-P450 monooxygenase
    NP_001403614.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416685.1 → NP_001403614.1  oryzalexin D synthase

      Status: VALIDATED

      Source sequence(s)
      AK069701, CI125966, CI133516, CI589023
      UniProtKB/Swiss-Prot
      A0A0P0VKN5, Q6YTF1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      22170892..22172699
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YTF1.1 GenPept UniProtKB/Swiss-Prot:Q6YTF1

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