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    LOC4331331 UPF0548 protein At2g17695 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331331, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4331331
    Gene description
    UPF0548 protein At2g17695
    Locus tag
    OSNPB_030107600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 18.1), leaves after flowering (RPKM 18.0) and 6 other tissues See more
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    Genomic context

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    See LOC4331331 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (465183..468003)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331330 Neighboring gene uncharacterized LOC107276254 Neighboring gene cyclin-dependent protein kinase inhibitor EL2-like Neighboring gene phosphoglucan phosphatase DSP4, amyloplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UPF0548 protein At2g17695
    Names
    Os03g0107600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423902.1 → NP_001410831.1  UPF0548 protein At2g17695 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK071651
      UniProtKB/TrEMBL
      B9F5H8, Q01MR7, Q7XTJ4

    2. NM_001423903.1 → NP_001410832.1  UPF0548 protein At2g17695 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK289104, AP014959
      UniProtKB/TrEMBL
      A0A8J8XRH3, B9FAC8, Q01MR7, Q10SY6

    3. NM_001423904.1 → NP_001410833.1  UPF0548 protein At2g17695 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AK101392, AP014959
      UniProtKB/TrEMBL
      Q01MR7, Q10SY4

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      465183..468003
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777526.2 → XP_015633012.1  UPF0548 protein At2g17695 isoform X2

      UniProtKB/TrEMBL
      Q01MR7
      Conserved Domains (1) summary
      pfam09348
      Location:75 → 234
      DUF1990; Domain of unknown function (DUF1990)

    2. XM_015777527.2 → XP_015633013.1  UPF0548 protein At2g17695 isoform X3

      UniProtKB/TrEMBL
      Q10SY6
      Conserved Domains (1) summary
      pfam09348
      Location:80 → 231
      DUF1990; Domain of unknown function (DUF1990)

    3. XM_015777523.2 → XP_015633009.1  UPF0548 protein At2g17695 isoform X1

      UniProtKB/TrEMBL
      Q01MR7, Q10SY4
      Conserved Domains (1) summary
      pfam09348
      Location:90 → 241
      DUF1990; Domain of unknown function (DUF1990)

    4. XM_015777525.2 → XP_015633011.1  UPF0548 protein At2g17695 isoform X1

      UniProtKB/TrEMBL
      Q01MR7, Q10SY4
      Conserved Domains (1) summary
      pfam09348
      Location:90 → 241
      DUF1990; Domain of unknown function (DUF1990)

    5. XM_015777529.2 → XP_015633015.1  UPF0548 protein At2g17695 isoform X4

      UniProtKB/TrEMBL
      B9F5H8, Q01MR7, Q7XTJ4
      Conserved Domains (1) summary
      pfam09348
      Location:61 → 212
      DUF1990; Domain of unknown function (DUF1990)

    6. XM_015777528.2 → XP_015633014.1  UPF0548 protein At2g17695 isoform X4

      UniProtKB/TrEMBL
      B9F5H8, Q01MR7, Q7XTJ4
      Conserved Domains (1) summary
      pfam09348
      Location:61 → 212
      DUF1990; Domain of unknown function (DUF1990)
    Nucleotide Protein
    Heading Accession and Version

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