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    LOC4342987 WD40 repeat-containing protein HOS15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342987, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4342987
    Gene description
    WD40 repeat-containing protein HOS15
    Locus tag
    OSNPB_070405100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 24.5), roots after flowering (RPKM 23.8) and 6 other tissues See more
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    Genomic context

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    See LOC4342987 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (12578989..12595401)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (12424065..12440513)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357349 Neighboring gene uncharacterized LOC136357409 Neighboring gene uncharacterized LOC9272296 Neighboring gene uncharacterized LOC136357207

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD40 repeat-containing protein HOS15
    Names
    OSJNBa0016I05.34
    Os07g0405100
    P0613B07.110
    WD-40 repeat protein-like
    putative F-box-like/WD repeat-containing protein TBL1XR1-A
    putative WD-40 repeat protein family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      12578989..12595401
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791852.3 → XP_015647338.1  WD40 repeat-containing protein HOS15

      UniProtKB/TrEMBL
      A0A0P0X4L8, Q0D730, Q7EYK0
      Conserved Domains (4) summary
      PTZ00266
      Location:96 → 253
      PTZ00266; NIMA-related protein kinase; Provisional
      cd00200
      Location:200 → 511
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:310 → 347
      7WD40; WD40 repeat [structural motif]
      pfam08513
      Location:8 → 32
      LisH
    Nucleotide Protein
    Heading Accession and Version

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