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    LOC4334952 uncharacterized LOC4334952 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334952, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334952
    Gene description
    uncharacterized LOC4334952
    Locus tag
    OSNPB_040117100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 137.6), flower buds (RPKM 122.3) and 6 other tissues See more
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    Genomic context

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    See LOC4334952 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (1091305..1093405, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (1008068..1010185, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene very-long-chain 3-oxoacyl-CoA reductase 1 Neighboring gene 3-ketoacyl-CoA synthase 6 Neighboring gene WEB family protein At1g75720 Neighboring gene uncharacterized LOC107276960 Neighboring gene uncharacterized LOC4334953 Neighboring gene small nucleolar RNA snoR103

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4334952
    Names
    Os04g0117100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      1091305..1093405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777936.3 → XP_015633422.1  uncharacterized protein LOC4334952

      UniProtKB/TrEMBL
      A2XPS1, A3AQB2, Q01MV8, Q0JFC3, Q7XT14
      Conserved Domains (1) summary
      pfam05680
      Location:11 → 52
      ATP-synt_E; ATP synthase E chain
    Nucleotide Protein
    Heading Accession and Version

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