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    LOC4343220 DNA-directed RNA polymerase III subunit RPC8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343220, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343220
    Gene description
    DNA-directed RNA polymerase III subunit RPC8
    Locus tag
    OSNPB_070477000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 6.8), roots after flowering (RPKM 5.9) and 6 other tissues See more
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    Genomic context

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    See LOC4343220 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17436428..17440998, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17270834..17274719, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase CYP21-4 Neighboring gene thioredoxin-like protein CDSP32, chloroplastic Neighboring gene S-adenosylmethionine synthase 2-like Neighboring gene uncharacterized LOC4343221 Neighboring gene uncharacterized LOC112939613

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase III subunit RPC8
    Names
    Os07g0477000
    P0640E12.113
    putative DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
    NP_001409085.1
    XP_015646733.1
    XP_015646734.1
    XP_015646736.1
    XP_015646737.1
    XP_066168075.1
    XP_066168076.1
    XP_066168077.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422156.1 → NP_001409085.1  DNA-directed RNA polymerase III subunit RPC8

      Status: VALIDATED

      Source sequence(s)
      AK059952
      UniProtKB/TrEMBL
      A0A0P0X6C2, B8B5Z9, Q84NN3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      17436428..17440998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311978.1 → XP_066168075.1  DNA-directed RNA polymerase III subunit RPC8 isoform X1

    2. XM_066311979.1 → XP_066168076.1  DNA-directed RNA polymerase III subunit RPC8 isoform X2

    3. XM_015791251.3 → XP_015646737.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

      UniProtKB/TrEMBL
      A0A0P0X6C2, B8B5Z9, Q84NN3
      Conserved Domains (2) summary
      COG1095
      Location:1 → 187
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
      cd04330
      Location:2 → 81
      RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...

    4. XM_015791250.3 → XP_015646736.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

      UniProtKB/TrEMBL
      A0A0P0X6C2, B8B5Z9, Q84NN3
      Conserved Domains (2) summary
      COG1095
      Location:1 → 187
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
      cd04330
      Location:2 → 81
      RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...

    5. XM_015791247.3 → XP_015646733.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

      UniProtKB/TrEMBL
      A0A0P0X6C2, B8B5Z9, Q84NN3
      Conserved Domains (2) summary
      COG1095
      Location:1 → 187
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
      cd04330
      Location:2 → 81
      RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...

    6. XM_066311980.1 → XP_066168077.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

      UniProtKB/TrEMBL
      A0A0P0X6C2, B8B5Z9, Q84NN3

    7. XM_015791248.3 → XP_015646734.1  DNA-directed RNA polymerase III subunit RPC8 isoform X3

      UniProtKB/TrEMBL
      A0A0P0X6C2, B8B5Z9, Q84NN3
      Conserved Domains (2) summary
      COG1095
      Location:1 → 187
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
      cd04330
      Location:2 → 81
      RNAP_III_Rpc25_N; Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP ...
    Nucleotide Protein
    Heading Accession and Version

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