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    LOC4334738 shaggy-related protein kinase delta [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334738, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334738
    Gene description
    shaggy-related protein kinase delta
    Locus tag
    OSNPB_030841800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334738 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36358912..36364952, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35385936..35392063, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene anthocyanidin 5,3-O-glucosyltransferase Neighboring gene prohibitin-2, mitochondrial Neighboring gene prolycopene isomerase, chloroplastic Neighboring gene uncharacterized LOC107280350

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    shaggy-related protein kinase delta; shaggy-related protein kinase kappa
    Names
    Os03g0841800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36358912..36364952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777621.3 → XP_015633107.1  shaggy-related protein kinase kappa isoform X1

      UniProtKB/TrEMBL
      A0A0P0W5E0, A2XNW5, Q0DLX0, Q6AVQ3
      Conserved Domains (1) summary
      cd14137
      Location:81 → 373
      STKc_GSK3; The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3

    2. XM_015777622.3 → XP_015633108.1  shaggy-related protein kinase delta isoform X2

      Conserved Domains (1) summary
      cd14137
      Location:1 → 243
      STKc_GSK3; The catalytic domain of the Serine/Threonine Kinase, Glycogen Synthase Kinase 3

    3. XM_015777623.3 → XP_015633109.1  shaggy-related protein kinase kappa isoform X3

      Conserved Domains (1) summary
      cl21453
      Location:88 → 161
      PKc_like; Protein Kinases, catalytic domain

    4. XM_066308829.1 → XP_066164926.1  shaggy-related protein kinase kappa isoform X3

    5. XM_066308830.1 → XP_066164927.1  shaggy-related protein kinase kappa isoform X4

    6. XM_026024074.2 → XP_025879859.1  shaggy-related protein kinase kappa isoform X3

      Conserved Domains (1) summary
      cl21453
      Location:88 → 161
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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