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    LOC107277343 pentatricopeptide repeat-containing protein At5g38730 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107277343, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC107277343
    Gene description
    pentatricopeptide repeat-containing protein At5g38730
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 47.0), leaves after flowering (RPKM 40.6) and 5 other tissues See more
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    Genomic context

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    See LOC107277343 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35572413..35575941, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267532 Neighboring gene uncharacterized LOC4331225 Neighboring gene signal peptidase complex catalytic subunit SEC11C Neighboring gene uncharacterized LOC4331227 Neighboring gene uncharacterized LOC107276217

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g38730
    Names
    Os02g0827900
    P0452F04.33-1
    UDP-glucoronosyl/UDP-glucosyl transferase family protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35572413..35575941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769851.2 → XP_015625337.1  pentatricopeptide repeat-containing protein At5g38730

      UniProtKB/TrEMBL
      A0A0P0VRV0, Q6K7Q1
      Conserved Domains (3) summary
      PLN03218
      Location:129 → 436
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:252 → 279
      PPR; PPR repeat [structural motif]
      cl29710
      Location:454 → 486
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version

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