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    LOC4332694 mitochondrial import receptor subunit TOM40-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332694, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332694
    Gene description
    mitochondrial import receptor subunit TOM40-1
    Locus tag
    OSNPB_030323800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 24.1), flowers (RPKM 23.2) and 6 other tissues See more
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    Genomic context

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    See LOC4332694 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11797186..11802429)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11742502..11747914)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD14 Neighboring gene chaperone protein dnaJ 20, chloroplastic Neighboring gene non-specific lipid transfer protein GPI-anchored 2 Neighboring gene ETHYLENE INSENSITIVE 3-like 1 protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mitochondrial outer membrane translocase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial import receptor subunit TOM40-1
    Names
    Os03g0323800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      11797186..11802429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772345.3 → XP_015627831.1  mitochondrial import receptor subunit TOM40-1

      UniProtKB/TrEMBL
      A0A8J8YAS4, A3AHG9, Q0DS99, Q10M45
      Conserved Domains (1) summary
      cd07305
      Location:56 → 336
      Porin3_Tom40; Translocase of outer mitochondrial membrane 40 (Tom40)
    Nucleotide Protein
    Heading Accession and Version

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