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    LOC4333737 E3 ubiquitin-protein ligase UPL7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333737, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4333737
    Gene description
    E3 ubiquitin-protein ligase UPL7
    Locus tag
    OSNPB_030683866
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 15.7), roots after flowering (RPKM 10.0) and 6 other tissues See more
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    Genomic context

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    See LOC4333737 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (28129962..28141446, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (27257034..27268594, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein unc-13 homolog Neighboring gene GDSL esterase/lipase At5g03820 Neighboring gene GATA transcription factor 18-like Neighboring gene uncharacterized LOC4333739

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase UPL7
    Names
    HECT-domain domain-containing protein
    Os03g0683866
    Os03g0683900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      28129962..28141446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777120.3 → XP_015632606.1  E3 ubiquitin-protein ligase UPL7 isoform X1

      UniProtKB/TrEMBL
      B8APK1
      Conserved Domains (1) summary
      cd00078
      Location:789 → 1155
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    2. XM_015777119.3 → XP_015632605.1  E3 ubiquitin-protein ligase UPL7 isoform X1

      UniProtKB/TrEMBL
      B8APK1
      Conserved Domains (1) summary
      cd00078
      Location:789 → 1155
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    3. XM_066308531.1 → XP_066164628.1  E3 ubiquitin-protein ligase UPL7 isoform X2

      UniProtKB/TrEMBL
      B8APK1

    RNA

    1. XR_010739973.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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