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    LOC4326622 protein SEH1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326622, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326622
    Gene description
    protein SEH1
    Locus tag
    OSNPB_010620100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 26.7), roots before flowering (RPKM 23.8) and 6 other tissues See more
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    Genomic context

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    See LOC4326622 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25282214..25287244, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24703769..24708927, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene polypyrimidine tract-binding protein homolog 1 Neighboring gene uncharacterized LOC4326620 Neighboring gene uncharacterized LOC107278244 Neighboring gene uncharacterized LOC136356913 Neighboring gene uncharacterized LOC136356912 Neighboring gene uncharacterized LOC107276505 Neighboring gene hydroquinone glucosyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to amino acid starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of TORC1 signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Seh1-associated complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore outer ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SEH1
    Names
    B1040D09.39
    Os01g0620100
    P0407B12.24
    SEC13 protein homolog YGL100w-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      25282214..25287244 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766348.3 → XP_015621834.1  protein SEH1

      UniProtKB/TrEMBL
      B8ABX6, B9EY41, Q0JL67, Q5ZBF5
      Conserved Domains (2) summary
      sd00039
      Location:15 → 51
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:15 → 305
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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