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    LOC4332038 SNAP25 homologous protein SNAP32-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332038, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332038
    Gene description
    SNAP25 homologous protein SNAP32-like
    Locus tag
    OSNPB_030212400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 19.7), roots after flowering (RPKM 19.2) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (5908113..5911292)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (5860701..5863894)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene plant intracellular Ras-group-related LRR protein 7-like Neighboring gene B3 domain-containing protein Os03g0212300-like Neighboring gene microtubule-destabilizing protein 60 Neighboring gene probable mitochondrial-processing peptidase subunit beta, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SNAP25 homologous protein SNAP32-like
    Names
    Os03g0212400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      5908113..5911292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024437.2 → XP_025880222.1  SNAP25 homologous protein SNAP32-like

      UniProtKB/TrEMBL
      A0A8J8YLB3, B8AQS2, B9F656, Q10Q25
      Conserved Domains (2) summary
      cd15841
      Location:182 → 240
      SNARE_Qc; SNARE motif, subgroup Qc
      cd15861
      Location:50 → 114
      SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9

    2. XM_015773129.3 → XP_015628615.1  SNAP25 homologous protein SNAP32-like

      UniProtKB/TrEMBL
      A0A8J8YLB3, B8AQS2, B9F656, Q10Q25
      Conserved Domains (2) summary
      cd15841
      Location:182 → 240
      SNARE_Qc; SNARE motif, subgroup Qc
      cd15861
      Location:50 → 114
      SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9

    3. XM_015773130.3 → XP_015628616.1  SNAP25 homologous protein SNAP32-like

      UniProtKB/TrEMBL
      A0A8J8YLB3, B8AQS2, B9F656, Q10Q25
      Conserved Domains (2) summary
      cd15841
      Location:182 → 240
      SNARE_Qc; SNARE motif, subgroup Qc
      cd15861
      Location:50 → 114
      SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9
    Nucleotide Protein
    Heading Accession and Version

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