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    LOC4340943 cellulose synthase-like protein D5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340943, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4340943
    Gene description
    cellulose synthase-like protein D5
    Locus tag
    OSNPB_060336500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSLD5; OsCslD5; OsJ_020361
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    Genomic context

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    See LOC4340943 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (13599444..13603075)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (13414647..13418280)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene uncharacterized LOC107278311 Neighboring gene probable aquaporin TIP2-2 Neighboring gene uncharacterized LOC107281366 Neighboring gene zinc-finger homeodomain protein 9-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cellulose synthase-like protein D5
    Names
    LOC_Os06g22980
    P0427E01.10
    putative cellulose synthase-like protein D4
    NP_001410913.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423984.1 → NP_001410913.1  cellulose synthase-like protein D5

      Status: VALIDATED

      Source sequence(s)
      AK072260, AP014962, CI347401
      UniProtKB/Swiss-Prot
      A0A0P0WW80, A2YCI3, Q5Z6E5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      13599444..13603075
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z6E5.1 GenPept UniProtKB/Swiss-Prot:Q5Z6E5

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