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    LOC4347843 thioredoxin H2-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347843, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4347843
    Gene description
    thioredoxin H2-2-like
    Locus tag
    OSNPB_090559600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1065_E04.18
    Expression
    Broad expression in leaves before flowering (RPKM 28.7), flower buds (RPKM 12.6) and 6 other tissues See more
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    Genomic context

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    See LOC4347843 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26673005..26680667)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22228543..22236160)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase ARI7 Neighboring gene protein PLASTID MOVEMENT IMPAIRED 1 Neighboring gene uncharacterized LOC9267744 Neighboring gene organic cation/carnitine transporter 7 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    thioredoxin H2-2-like; thioredoxin
    Names
    Os09g0559600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26673005..26680667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304296.1 → XP_066160393.1  thioredoxin H2-2-like isoform X4

      UniProtKB/TrEMBL
      A3C1G5

    2. XM_026020415.2 → XP_025876200.1  thioredoxin H2-2-like isoform X1

      Conserved Domains (1) summary
      cd02947
      Location:79 → 168
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...

    3. XM_066304295.1 → XP_066160392.1  thioredoxin H2-2-like isoform X3

      UniProtKB/TrEMBL
      A3C1G5

    4. XM_066304294.1 → XP_066160391.1  thioredoxin isoform X2

      UniProtKB/TrEMBL
      A3C1G5
    Nucleotide Protein
    Heading Accession and Version

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