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    LOC4347527 double-stranded RNA-binding protein 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347527, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4347527
    Gene description
    double-stranded RNA-binding protein 5-like
    Locus tag
    OSNPB_090508500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DRB2; DRB5; OsDRB2
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    Genomic context

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    See LOC4347527 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24121893..24123795)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19710753..19712807)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET11 Neighboring gene probable protein S-acyltransferase 7 Neighboring gene peroxisomal nicotinamide adenine dinucleotide carrier Neighboring gene multiple organellar RNA editing factor 8, chloroplastic/mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    double-stranded RNA-binding protein 5
    Names
    LOC_Os09g33460
    dsRNA-binding protein 2
    dsRNA-binding protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403899.1 → NP_001390828.1  double-stranded RNA-binding protein 5

      Status: VALIDATED

      Source sequence(s)
      AK058662, AU097110, C74261, CI017184, CI128785, CI137945
      UniProtKB/TrEMBL
      A2Z2Y5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24121893..24123795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755250.3 → XP_015610736.1  double-stranded RNA-binding protein 5 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0XPP7, B7E2T6, B7E321, Q0J0H8, Q766V3
      Conserved Domains (2) summary
      cd19907
      Location:1 → 69
      DSRM_AtDRB-like_rpt1; first double-stranded RNA binding motif of Arabidopsis thaliana double-stranded RNA-binding proteins (AtDRBs)and similar proteins
      cd19908
      Location:86 → 154
      DSRM_AtDRB-like_rpt2; second double-stranded RNA binding motif of Arabidopsis thaliana double-stranded RNA-binding proteins (AtDRBs)and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B7E321.1 GenPept UniProtKB/Swiss-Prot:B7E321

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