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    LOC4333079 elongation factor 1-delta 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333079, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4333079
    Gene description
    elongation factor 1-delta 2-like
    Locus tag
    OSNPB_030406200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333079 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (17100675..17104895)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (16654321..16658554)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable nucleoredoxin 1-2 Neighboring gene SPX domain-containing protein 5-like Neighboring gene protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS Neighboring gene protein LAZ1 homolog 2 Neighboring gene uncharacterized LOC4333081

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel variant of translation elongation factor-1beta: isolation and characterization of the rice gene encoding EF-1beta2. Terui Y, et al. Biochim Biophys Acta, 1998 Nov 8. PMID 9804992
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of eukaryotic translation elongation factor 1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    elongation factor 1-delta 2
    Names
    EF-1-delta 2
    Elongation factor 1B-beta 2
    LOC_Os03g29260
    OSJNBa0002D18.20
    eEF-1B beta 2
    elongation factor 1 beta 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402177.1 → NP_001389106.1  elongation factor 1-delta 2

      Status: VALIDATED

      Source sequence(s)
      CF328537, CI071658, CI236661, CI749991
      UniProtKB/Swiss-Prot
      Q10JV7, Q40682, Q9ZNV2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      17100675..17104895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q40682.3 GenPept UniProtKB/Swiss-Prot:Q40682

    Gene LinkOut

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    Research Materials