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    LOC9272524 DNA oxidative demethylase ALKBH2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272524, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC9272524
    Gene description
    DNA oxidative demethylase ALKBH2
    Locus tag
    OSNPB_060286310
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Pizh_5
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    Genomic context

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    See LOC9272524 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (10518163..10520475)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (10341145..10343490)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356840 Neighboring gene uncharacterized LOC136356827 Neighboring gene sister chromatid cohesion protein PDS5 homolog A Neighboring gene protein NOI4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytosine C-5 DNA demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ferrous iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA alkylation repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA oxidative demethylase ALKBH2
    Names
    Os06g0286310
    oxidoreductase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      10518163..10520475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786439.3 → XP_015641925.1  DNA oxidative demethylase ALKBH2

      UniProtKB/TrEMBL
      A0A411DBC7, A1XFD0, B8B0N2, B9FSS7
      Conserved Domains (1) summary
      pfam13532
      Location:50 → 251
      2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein
    Heading Accession and Version

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