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    LOC4344255 universal stress protein PHOS34 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344255, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4344255
    Gene description
    universal stress protein PHOS34
    Locus tag
    OSNPB_070673400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in milk grains (RPKM 12.3), leaves before flowering (RPKM 5.8) and 5 other tissues See more
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    Genomic context

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    See LOC4344255 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28468393..28469623)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939723 Neighboring gene uncharacterized LOC107281655 Neighboring gene serine/arginine-rich-splicing factor SR34 Neighboring gene uncharacterized LOC9269218

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    universal stress protein PHOS34
    Names
    Os07g0673400
    P0470D12.142-1
    universal stress protein USP1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      28468393..28469623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791678.2 → XP_015647164.1  universal stress protein PHOS34

      UniProtKB/TrEMBL
      A0A0P0XA35, A2YPU4, Q0D3Q2, Q8H454
      Conserved Domains (1) summary
      cd00293
      Location:13 → 158
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...
    Nucleotide Protein
    Heading Accession and Version

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