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    LOC4344267 probable acyl-CoA dehydrogenase IBR3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344267, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4344267
    Gene description
    probable acyl-CoA dehydrogenase IBR3
    Locus tag
    OSNPB_070675000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 62.5), flower buds (RPKM 55.4) and 6 other tissues See more
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    Genomic context

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    See LOC4344267 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28786246..28792654)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28552611..28559018)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor RAP2-3 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene pectinesterase Neighboring gene uncharacterized LOC9270854

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyl-CoA dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation using acyl-CoA dehydrogenase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable acyl-CoA dehydrogenase IBR3
    Names
    Os07g0675000
    P0037D09.22-1
    P0618H09.20-1
    putative acyl-CoA dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28786246..28792654
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791610.3 → XP_015647096.1  probable acyl-CoA dehydrogenase IBR3

      UniProtKB/TrEMBL
      B8B5V0, B9FUV0, Q69J84, Q6ZDX3
      Conserved Domains (1) summary
      PLN02876
      Location:1 → 831
      PLN02876; acyl-CoA dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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