LOC4341537 zinc finger CCCH domain-containing protein 44-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4341537
Gene description: zinc finger CCCH domain-containing protein 44-like
Locus tag: OSNPB_060618100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsC3H44
Expression: Ubiquitous expression in flower buds (RPKM 18.2), leaves before flowering (RPKM 15.7) and 6 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (24808827..24811969, complement)

Chromosome 6 - NC_029261.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables mRNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables metal ion binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: zinc finger CCCH domain-containing protein 44

Names: KH domain-containing protein / zinc finger protein-like; LOC_Os06g41384; P0012B02.7-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001421649.1 → NP_001408578.1 zinc finger CCCH domain-containing protein 44

Status: VALIDATED

Source sequence(s)

AK103787, CI339104, CI526822, CI675148

UniProtKB/Swiss-Prot

Q0DAX6, Q69XQ3

UniProtKB/TrEMBL

B9FU57

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029261.1 Reference IRGSP-1.0 Primary Assembly

Range

24808827..24811969 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015785583.2 → XP_015641069.1 zinc finger CCCH domain-containing protein 44

UniProtKB/Swiss-Prot

Q69XQ3

Conserved Domains (3) summary

COG5063
Location:237 → 292

CTH1; CCCH-type Zn-finger protein [General function prediction only]

pfam00642
Location:260 → 285

zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

cl00098
Location:169 → 234

KH-I; K homology (KH) RNA-binding domain, type I