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    LOC4332469 cysteine-rich receptor-like protein kinase 25 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332469, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4332469
    Gene description
    cysteine-rich receptor-like protein kinase 25
    Locus tag
    OSNPB_030284650
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in milk grains (RPKM 8.7), flower buds (RPKM 5.3) and 2 other tissues See more
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    Genomic context

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    See LOC4332469 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9844821..9847057)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9794153..9796382)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene mitochondrial hydrolase YKR070W Neighboring gene Thioredoxin-like protein AAED1, chloroplastic Neighboring gene Topoisomerase 6 subunit A3 Neighboring gene pentatricopeptide repeat-containing protein At5g02830, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cysteine-rich receptor-like protein kinase 25
    Names
    Os03g0284650
    Os03g0284700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402133.1 → NP_001389062.1  cysteine-rich receptor-like protein kinase 25 precursor

      Status: VALIDATED

      Source sequence(s)
      AP014959, CI205902, CI344546, CI690883
      UniProtKB/TrEMBL
      A0A0P0VW99

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9844821..9847057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774540.3 → XP_015630026.1  cysteine-rich receptor-like protein kinase 25 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VW99
      Conserved Domains (1) summary
      pfam01657
      Location:87 → 173
      Stress-antifung; Salt stress response/antifungal
    Nucleotide Protein
    Heading Accession and Version

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