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    LOC4348867 heterogeneous nuclear ribonucleoprotein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348867, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348867
    Gene description
    heterogeneous nuclear ribonucleoprotein 1
    Locus tag
    OSNPB_100470900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 38.6), leaves after flowering (RPKM 35.6) and 6 other tissues See more
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    Genomic context

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    See LOC4348867 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (18097562..18102883)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17431239..17436598)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 5.2 Neighboring gene uncharacterized LOC136353810 Neighboring gene protein unc-13 homolog Neighboring gene uncharacterized LOC112936618

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein 1
    Names
    Os10g0470900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      18097562..18102883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758759.3 → XP_015614245.1  heterogeneous nuclear ribonucleoprotein 1

      UniProtKB/TrEMBL
      A0A5S6RDD7, A3C5M7, Q7XDI5, Q9FWK8
      Conserved Domains (2) summary
      cd12325
      Location:8 → 78
      RRM1_hnRNPA_hnRNPD_like; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP D subfamilies and similar proteins
      cd12330
      Location:129 → 206
      RRM2_Hrp1p; RNA recognition motif 2 (RRM2) found in yeast nuclear polyadenylated RNA-binding protein 4 (Hrp1p or Nab4p) and similar proteins

    RNA

    1. XR_001540666.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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