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    LOC4327722 pentatricopeptide repeat-containing protein At5g55740, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327722, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327722
    Gene description
    pentatricopeptide repeat-containing protein At5g55740, chloroplastic
    Locus tag
    OSNPB_010607800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (24544759..24547371)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23969728..23972316)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcriptional corepressor LEUNIG Neighboring gene transcriptional corepressor LEUNIG Neighboring gene probable inactive receptor kinase At2g26730 Neighboring gene uncharacterized LOC136354924

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g55740, chloroplastic
    Names
    Os01g0607800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      24544759..24547371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774129.3 → XP_015629615.1  pentatricopeptide repeat-containing protein At5g55740, chloroplastic

      UniProtKB/TrEMBL
      A2WSF8
      Conserved Domains (4) summary
      sd00004
      Location:448 → 475
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:245 → 275
      PPR; PPR repeat
      pfam12854
      Location:309 → 341
      PPR_1; PPR repeat
      pfam13041
      Location:479 → 528
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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