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    LOC4330708 probable glucomannan 4-beta-mannosyltransferase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330708, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330708
    Gene description
    probable glucomannan 4-beta-mannosyltransferase 6
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSLA6; OsCslA6; OJ1118_G04.6; OJ1734_E02.33
    Annotation information
    not in current annotation release
    Expression
    Broad expression in flower buds (RPKM 21.5), flowers (RPKM 7.1) and 4 other tissues See more
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    Genomic context

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    See LOC4330708 in Genome Data Viewer
    Location:
    chromosome: 2
    Annotation release Status Assembly Chr Location
    102 latest, but not current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31228306..31232492, complement)

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable glucomannan 4-beta-mannosyltransferase 6
    Names
    Cellulose synthase-like protein A6
    Glucomannan synthase
    LOC_Os02g51060
    Mannan synthase 6
    Os02g0744500
    Os02g0744600
    Os02g0744650
    probable mannan synthase 6
    putative glycosyltransferase 10
    NP_001403820.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416891.1 → NP_001403820.1  probable glucomannan 4-beta-mannosyltransferase 6

      Status: VALIDATED

      Source sequence(s)
      CB644141, CB669064, CB669100, CI381172, CI616382, CI648969
      UniProtKB/TrEMBL
      B8AIF9, B9F2Z3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z2T9.2 GenPept UniProtKB/Swiss-Prot:Q6Z2T9

    Gene LinkOut

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