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    LOC4335756 arogenate dehydratase/prephenate dehydratase 6, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335756, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335756
    Gene description
    arogenate dehydratase/prephenate dehydratase 6, chloroplastic
    Locus tag
    OSNPB_040406600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4335756 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (20540142..20541786)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (20169574..20171239)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uridylate kinase PUMPKIN, chloroplastic Neighboring gene uncharacterized LOC4335754 Neighboring gene uncharacterized LOC9266533 Neighboring gene gibberellin 2-beta-dioxygenase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables arogenate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables prephenate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-phenylalanine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arogenate dehydratase/prephenate dehydratase 6, chloroplastic
    Names
    Os04g0406600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      20540142..20541786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781710.3 → XP_015637196.1  arogenate dehydratase/prephenate dehydratase 6, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0W9W4, A2XT43, Q0JDF7
      Conserved Domains (3) summary
      cd04905
      Location:320 → 414
      ACT_CM-PDT; C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme
      PLN02317
      Location:32 → 420
      PLN02317; arogenate dehydratase
      cd13631
      Location:131 → 310
      PBP2_Ct-PDT_like; Catalytic domain of prephenate dehydratase from Chlorobium tepidum and similar proteins, subgroup 2; the type 2 periplasmic binding protein fold
    Nucleotide Protein
    Heading Accession and Version

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