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    LOC4346348 mediator of RNA polymerase II transcription subunit 15a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346348, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346348
    Gene description
    mediator of RNA polymerase II transcription subunit 15a
    Locus tag
    OSNPB_080564800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346348 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28443422..28453679, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (28295053..28305341, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative kinase-like protein TMKL1 Neighboring gene uncharacterized LOC136351308 Neighboring gene uncharacterized LOC112936153 Neighboring gene uncharacterized LOC4346349 Neighboring gene transfer RNA leucine (anticodon AAG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 15a
    Names
    OSJNBa0044E16.7
    Os08g0564800
    P0705A05.123
    putative CTV.22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28443422..28453679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794334.3 → XP_015649820.1  mediator of RNA polymerase II transcription subunit 15a

      UniProtKB/TrEMBL
      A0A0N7KQB4, B8B9M2, Q6Z1R0, Q7EZK6
      Conserved Domains (2) summary
      PRK10263
      Location:243 → 345
      PRK10263; DNA translocase FtsK; Provisional
      pfam16987
      Location:34 → 115
      KIX_2; KIX domain
    Nucleotide Protein
    Heading Accession and Version

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