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    LOC4339173 SNF1-related protein kinase regulatory subunit beta-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339173, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339173
    Gene description
    SNF1-related protein kinase regulatory subunit beta-1
    Locus tag
    OSNPB_050491200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OSKbeta2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 30.6), flower buds (RPKM 28.9) and 6 other tissues See more
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    Genomic context

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    See LOC4339173 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (24252551..24255686, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24137678..24140997, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML9 Neighboring gene calmodulin-2-like Neighboring gene leucine-rich repeat protein 1 Neighboring gene myb family transcription factor PHL7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SNF1-related protein kinase regulatory subunit beta-1
    Names
    Os05g0491200
    beta subunit 2 of SnRK1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      24252551..24255686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783665.3 → XP_015639151.1  SNF1-related protein kinase regulatory subunit beta-1 isoform X2

      UniProtKB/TrEMBL
      Q18PR8
      Conserved Domains (2) summary
      pfam04739
      Location:176 → 243
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interaction domain
      pfam16561
      Location:62 → 142
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

    2. XM_015783664.3 → XP_015639150.1  SNF1-related protein kinase regulatory subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WNW9, Q18PR8, Q6F337
      Conserved Domains (2) summary
      pfam04739
      Location:209 → 276
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interaction domain
      pfam16561
      Location:95 → 175
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase
    Nucleotide Protein
    Heading Accession and Version

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