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    LOC4344909 probable LRR receptor-like serine/threonine-protein kinase At1g56130 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344909, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4344909
    Gene description
    probable LRR receptor-like serine/threonine-protein kinase At1g56130
    Locus tag
    OSNPB_080202300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1114_D06.113-1
    Expression
    Broad expression in leaves after flowering (RPKM 14.7), roots after flowering (RPKM 12.6) and 4 other tissues See more
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    Genomic context

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    See LOC4344909 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (5993614..6011131)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5942640..5960144)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351367 Neighboring gene uncharacterized LOC4344908 Neighboring gene uncharacterized LOC136351310 Neighboring gene uncharacterized LOC136351401 Neighboring gene disease resistance protein RGA5-like Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g56140

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable LRR receptor-like serine/threonine-protein kinase At1g56130
    Names
    OSJNBa0073I05.142-1
    Os08g0202300
    Receptor-like serine/threonine kinase(RFK1)-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      5993614..6011131
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794224.3 → XP_015649710.1  probable LRR receptor-like serine/threonine-protein kinase At1g56130

      Conserved Domains (4) summary
      smart00219
      Location:724 → 991
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:727 → 993
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:147 → 170
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:451 → 637
      Malectin; Di-glucose binding within endoplasmic reticulum
    Nucleotide Protein
    Heading Accession and Version

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