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    LOC4327743 dynamin-related protein 3A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327743, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327743
    Gene description
    dynamin-related protein 3A
    Locus tag
    OSNPB_010920400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327743 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40817449..40825535, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40182759..40190916, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription and mRNA export factor ENY2 Neighboring gene uncharacterized LOC4327742 Neighboring gene uncharacterized protein At4g15970 Neighboring gene uncharacterized protein At4g15970

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dynamin-related protein 3A; dynamin-related protein 3B
    Names
    B1793G04.8-1
    Os01g0920400
    P0678F11.35-1
    putative dynamin like protein 2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40817449..40825535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758778.3 → XP_015614264.1  dynamin-related protein 3A isoform X3

      UniProtKB/TrEMBL
      B9EVX0
      Conserved Domains (3) summary
      cd08771
      Location:48 → 321
      DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
      pfam01031
      Location:243 → 529
      Dynamin_M; Dynamin central region
      pfam02212
      Location:628 → 716
      GED; Dynamin GTPase effector domain

    2. XM_015758768.3 → XP_015614254.1  dynamin-related protein 3B isoform X2

      UniProtKB/TrEMBL
      A0A0P0VC78, B9EVX0, Q0JGJ4, Q5JJJ5
      Conserved Domains (3) summary
      cd08771
      Location:48 → 321
      DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
      pfam01031
      Location:243 → 529
      Dynamin_M; Dynamin central region
      pfam02212
      Location:664 → 752
      GED; Dynamin GTPase effector domain

    3. XM_015758761.3 → XP_015614247.1  dynamin-related protein 3B isoform X1

      UniProtKB/TrEMBL
      B9EVX0
      Conserved Domains (4) summary
      cd08771
      Location:48 → 321
      DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
      COG0699
      Location:105 → 780
      CrfC; Replication fork clamp-binding protein CrfC (dynamin-like GTPase family) [Replication, recombination and repair]
      pfam01031
      Location:244 → 560
      Dynamin_M; Dynamin central region
      pfam02212
      Location:695 → 783
      GED; Dynamin GTPase effector domain
    Nucleotide Protein
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