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    LOC4345899 transcription factor BIM2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345899, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345899
    Gene description
    transcription factor BIM2
    Locus tag
    OSNPB_080490000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 100.4), flowers (RPKM 20.3) and 3 other tissues See more
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    Genomic context

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    See LOC4345899 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24362556..24368851)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24222396..24228673)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281978 Neighboring gene phosphatidylinositol 4-kinase gamma 6 Neighboring gene dof zinc finger protein MNB1A Neighboring gene uncharacterized LOC4345901

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor BIM2
    Names
    Os08g0490000
    P0605H02.26
    bHLH protein family-like
    bHLH transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24362556..24368851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795006.3 → XP_015650492.1  transcription factor BIM2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XHD5, B8BC11, Q0J4U2, Q6ZBQ2
      Conserved Domains (1) summary
      cd11453
      Location:220 → 295
      bHLH_AtBIM_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BES1-interacting Myc-like proteins (BIMs) and similar proteins

    2. XM_015795004.3 → XP_015650490.3  transcription factor BIM2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XHD5
    Nucleotide Protein
    Heading Accession and Version

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