LOC4329409 DNA repair protein RAD50 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4329409
Gene description: DNA repair protein RAD50
Locus tag: OSNPB_020497500
Gene type: protein coding
RefSeq status: MODEL
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: rad50
Expression: Ubiquitous expression in flower buds (RPKM 10.0), flowers (RPKM 8.2) and 6 other tissues See more
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Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	2	NC_089036.1 (17951012..17968864, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (17489929..17507814, complement)

Chromosome 2 - NC_089036.1 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

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Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed
enables G-quadruplex DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables double-stranded telomeric DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables single-stranded telomeric DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA duplex unwinding	IEA Inferred from Electronic Annotation more info	PubMed
involved_in chromosome organization involved in meiotic cell cycle	IEA Inferred from Electronic Annotation more info	PubMed
involved_in double-strand break repair	IEA Inferred from Electronic Annotation more info	PubMed
involved_in telomere maintenance via recombination	IEA Inferred from Electronic Annotation more info	PubMed
involved_in telomere maintenance via telomerase	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of Mre11 complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in condensed nuclear chromosome	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

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The following sections contain reference sequences that belong to a specific genome build. Explain