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    LOC4348258 cysteine-rich receptor-like protein kinase 44 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348258, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348258
    Gene description
    cysteine-rich receptor-like protein kinase 44
    Locus tag
    OSNPB_100200000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 5.3), flower buds (RPKM 3.5) and 6 other tissues See more
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    Genomic context

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    See LOC4348258 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (7171712..7179954, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (7022926..7031632, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene lysine-rich arabinogalactan protein 19-like Neighboring gene uncharacterized LOC136353802 Neighboring gene proline-rich receptor-like protein kinase PERK2 Neighboring gene uncharacterized LOC136353507

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine-rich receptor-like protein kinase 44; polyubiquitin; uncharacterized protein LOC4348258
    Names
    Os10g0200000
    putative receptor-like protein kinase At4g00960

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      7171712..7179954 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757545.3 → XP_015613031.1  uncharacterized protein LOC4348258 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XSF1, A0A8J8YHM8, B9G7X7, Q33AC4
      Conserved Domains (5) summary
      smart00213
      Location:523 → 594
      UBQ; Ubiquitin homologues
      cd17039
      Location:602 → 673
      Ubl_ubiquitin_like; ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins
      pfam00635
      Location:353 → 457
      Motile_Sperm; MSP (Major sperm protein) domain
      cl21453
      Location:23 → 304
      PKc_like; Protein Kinases, catalytic domain
      cl28922
      Location:676 → 747
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. XM_026020980.2 → XP_025876765.1  cysteine-rich receptor-like protein kinase 44 isoform X4

      Conserved Domains (1) summary
      cl21453
      Location:23 → 232
      PKc_like; Protein Kinases, catalytic domain

    3. XM_015757544.3 → XP_015613030.1  uncharacterized protein LOC4348258 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XSF1, A0A8J8YHM8, B9G7X7, Q33AC4
      Conserved Domains (5) summary
      smart00213
      Location:523 → 594
      UBQ; Ubiquitin homologues
      cd17039
      Location:602 → 673
      Ubl_ubiquitin_like; ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins
      pfam00635
      Location:353 → 457
      Motile_Sperm; MSP (Major sperm protein) domain
      cl21453
      Location:23 → 304
      PKc_like; Protein Kinases, catalytic domain
      cl28922
      Location:676 → 747
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    4. XM_015757547.2 → XP_015613033.1  uncharacterized protein LOC4348258 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XSF1
      Conserved Domains (5) summary
      smart00213
      Location:491 → 562
      UBQ; Ubiquitin homologues
      cd17039
      Location:570 → 641
      Ubl_ubiquitin_like; ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins
      pfam00635
      Location:321 → 425
      Motile_Sperm; MSP (Major sperm protein) domain
      cl21453
      Location:2 → 272
      PKc_like; Protein Kinases, catalytic domain
      cl28922
      Location:644 → 715
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    5. XM_066304991.1 → XP_066161088.1  polyubiquitin isoform X3

    Nucleotide Protein
    Heading Accession and Version

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