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    LOC4349051 NAD-dependent malic enzyme 59 kDa isoform, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349051, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4349051
    Gene description
    NAD-dependent malic enzyme 59 kDa isoform, mitochondrial
    Locus tag
    OSNPB_100503500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 115.3), flower buds (RPKM 101.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19910446..19915666)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19218572..19224002)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene folylpolyglutamate synthase Neighboring gene benzyl alcohol O-benzoyltransferase Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene tetraspanin-10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables malate dehydrogenase (decarboxylating) (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in malate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyruvate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAD-dependent malic enzyme 59 kDa isoform, mitochondrial
    Names
    Os10g0503500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19910446..19915666
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758970.3 → XP_015614456.1  NAD-dependent malic enzyme 59 kDa isoform, mitochondrial

      UniProtKB/TrEMBL
      B8BHR1, B9G6I3, Q0IWK3, Q337E9
      Conserved Domains (1) summary
      PLN03129
      Location:42 → 617
      PLN03129; NADP-dependent malic enzyme; Provisional

    RNA

    1. XR_010736923.1 RNA Sequence

    2. XR_010736924.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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