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    LOC4324670 senescence/dehydration-associated protein At4g35985, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324670, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324670
    Gene description
    senescence/dehydration-associated protein At4g35985, chloroplastic
    Locus tag
    OSNPB_010723100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 3.2), leaves before flowering (RPKM 2.9) and 5 other tissues See more
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    Genomic context

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    See LOC4324670 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30752559..30754574)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30155534..30157643)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene elongation factor 2 Neighboring gene small ribosomal subunit protein eS24z Neighboring gene NADP-dependent malic enzyme

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    senescence/dehydration-associated protein At4g35985, chloroplastic
    Names
    Os01g0723100
    P0022F10.12
    P0690B02.39
    senescence/dehydration-associated protein-related (ERD7)-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30752559..30754574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759310.3 → XP_015614796.1  senescence/dehydration-associated protein At4g35985, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0V7L0, B9EZ69, Q0JJQ9, Q5JM97
      Conserved Domains (1) summary
      pfam06911
      Location:184 → 369
      Senescence; Senescence-associated protein
    Nucleotide Protein
    Heading Accession and Version

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