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    LOC4323853 DNA repair protein RAD51 homolog 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323853, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323853
    Gene description
    DNA repair protein RAD51 homolog 3
    Locus tag
    OSNPB_010578000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4323853 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (22924610..22929557, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22353410..22358413, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene anthocyanin regulatory R-S protein Neighboring gene LRR receptor kinase BAK1 Neighboring gene uncharacterized LOC4323854 Neighboring gene FBD-associated F-box protein At5g60610

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rice RAD51 paralogs play essential roles in somatic homologous recombination for DNA repair. Xu Z, et al. Plant J, 2018 Jul. PMID 29729110
    2. The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells. Kou Y, et al. J Exp Bot, 2012 Sep. PMID 22859673, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables crossover junction DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables four-way junction DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meiotic DNA recombinase assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Rad51B-Rad51C-Rad51D-XRCC2 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of Rad51C-XRCC3 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein RAD51 homolog 3
    Names
    DNA repair protein radA (radA)-like
    Os01g0578000
    P0013G02.12-1
    P0013G02.12-2
    P0022F12.36-1
    P0022F12.36-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      22924610..22929557 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770924.3 → XP_015626410.1  DNA repair protein RAD51 homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V4D8, B8AAP9, B9EXP4, J9PFC8, Q0JLS0, Q9AWX8
      Conserved Domains (2) summary
      cd19492
      Location:108 → 319
      Rad51C; RAD51C recombinase
      cl38936
      Location:45 → 132
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_015770932.2 → XP_015626418.1  DNA repair protein RAD51 homolog 3 isoform X2

      UniProtKB/TrEMBL
      B7EF88, Q657A2, Q657Q9
      Conserved Domains (1) summary
      cd19492
      Location:75 → 279
      Rad51C; RAD51C recombinase
    Nucleotide Protein
    Heading Accession and Version

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