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    LOC4327806 condensin complex subunit 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327806, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327806
    Gene description
    condensin complex subunit 2
    Locus tag
    OSNPB_010532800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1619_F12.19
    Expression
    Broad expression in leaves before flowering (RPKM 9.4), flower buds (RPKM 6.6) and 6 other tissues See more
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    Genomic context

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    See LOC4327806 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (19818188..19825057)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (19250418..19257389)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354992 Neighboring gene uncharacterized LOC4327805 Neighboring gene probable cation transporter HKT3 Neighboring gene callose synthase 7 Neighboring gene beta-galactosidase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of condensin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    condensin complex subunit 2
    Names
    Os01g0532800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      19818188..19825057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758417.3 → XP_015613903.1  condensin complex subunit 2 isoform X1

      UniProtKB/TrEMBL
      B8A9N3
      Conserved Domains (1) summary
      cl19886
      Location:88 → 680
      Cnd2; Condensin complex subunit 2

    2. XM_015758430.3 → XP_015613916.1  condensin complex subunit 2 isoform X3

      UniProtKB/TrEMBL
      B8A9N3
      Conserved Domains (1) summary
      cl19886
      Location:88 → 679
      Cnd2; Condensin complex subunit 2

    3. XM_015758425.2 → XP_015613911.1  condensin complex subunit 2 isoform X2

      UniProtKB/TrEMBL
      B8A9N3
      Conserved Domains (1) summary
      cl19886
      Location:88 → 679
      Cnd2; Condensin complex subunit 2

    4. XM_015758437.3 → XP_015613923.1  condensin complex subunit 2 isoform X4

      UniProtKB/TrEMBL
      B8A9N3
      Conserved Domains (1) summary
      cl19886
      Location:88 → 678
      Cnd2; Condensin complex subunit 2
    Nucleotide Protein
    Heading Accession and Version

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