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    PIN1A auxin efflux carrier component 1a-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330700, updated on 6-Jun-2024

    Summary

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    Gene symbol
    PIN1A
    Gene description
    auxin efflux carrier component 1a-like
    Locus tag
    OSNPB_020743400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PIN1; REH1; OsPIN1; OsPIN1a; OsPIN1b; OsJ_08350; OJ1734_E02.14
    Expression
    Broad expression in roots before flowering (RPKM 15.7), flowers (RPKM 12.8) and 5 other tissues See more
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    Genomic context

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    See PIN1A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31158919..31162098, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330699 Neighboring gene uncharacterized LOC112937899 Neighboring gene probable serine/threonine-protein kinase SIS8 Neighboring gene uncharacterized protein At5g39570

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs. Norton GJ, et al. Genomics, 2008 Nov. PMID 18755262
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables auxin efflux transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in auxin export across the plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in auxin polar transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin efflux carrier component 1a
    Names
    Ethylene-insensitive root 1 homolog
    LOC_Os02g50960
    P0585G03.37
    auxin efflux carrier component 1
    putative auxin transport protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401976.1 → NP_001388905.1  auxin efflux carrier component 1a

      Status: VALIDATED

      Source sequence(s)
      AK102343, AU085991, CI609968
      UniProtKB/Swiss-Prot
      O81215, Q0DXM9, Q5SMQ9
      UniProtKB/TrEMBL
      B8AIF2, T2C7H5

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31158919..31162098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771613.2 → XP_015627099.1  auxin efflux carrier component 1a

      UniProtKB/Swiss-Prot
      Q5SMQ9
      Conserved Domains (2) summary
      TIGR00946
      Location:434 → 594
      2a69; he Auxin Efflux Carrier (AEC) Family
      pfam03547
      Location:9 → 188
      Mem_trans; Membrane transport protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5SMQ9.1 GenPept UniProtKB/Swiss-Prot:Q5SMQ9

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