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    LOC4329876 telomere length regulation protein TEL2 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329876, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC4329876
    Gene description
    telomere length regulation protein TEL2 homolog
    Locus tag
    OSNPB_020598400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1212_D02.17; OJ1212_D02.18
    Expression
    Ubiquitous expression in mature seeds (RPKM 17.4), roots before flowering (RPKM 16.3) and 6 other tissues See more
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    Genomic context

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    See LOC4329876 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23272513..23279714)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein Os02g0598200-like Neighboring gene golgin subfamily A member 4 Neighboring gene probable protein phosphatase 2C 16 Neighboring gene uncharacterized LOC4329878

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Hsp90 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance via telomerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telomere length regulation protein TEL2 homolog; uncharacterized protein LOC4329876
    Names
    OSJNBa0038P01.1
    OSJNBa0038P01.2
    Os02g0598400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      23272513..23279714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769687.2 → XP_015625173.1  uncharacterized protein LOC4329876 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VLB2, Q6K1U9

    2. XM_015769688.2 → XP_015625174.1  telomere length regulation protein TEL2 homolog isoform X2

      UniProtKB/TrEMBL
      B8AF08
      Conserved Domains (1) summary
      pfam10193
      Location:633 → 743
      Telomere_reg-2; Telomere length regulation protein
    Nucleotide Protein
    Heading Accession and Version

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