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    LOC4333020 uric acid degradation bifunctional protein TTL [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333020, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4333020
    Gene description
    uric acid degradation bifunctional protein TTL
    Locus tag
    OSNPB_030390700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 30.9), flowers (RPKM 29.8) and 6 other tissues See more
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    Genomic context

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    See LOC4333020 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (16001570..16004732)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15648870..15652152)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 6b-1 Neighboring gene histone H3.3 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC4333021

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydroxyisourate hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in purine nucleobase metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in urate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uric acid degradation bifunctional protein TTL
    Names
    Os03g0390700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      16001570..16004732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775047.3 → XP_015630533.1  uric acid degradation bifunctional protein TTL isoform X1

      UniProtKB/TrEMBL
      B8AQM6, B9F8T5, Q0DRE7, Q7XXQ9
      Conserved Domains (2) summary
      pfam00576
      Location:215 → 333
      Transthyretin; HIUase/Transthyretin family
      pfam09349
      Location:55 → 154
      OHCU_decarbox; OHCU decarboxylase

    2. XM_015775048.3 → XP_015630534.1  uric acid degradation bifunctional protein TTL isoform X2

      UniProtKB/TrEMBL
      B8AQM6, Q10KB1
      Conserved Domains (2) summary
      pfam00576
      Location:195 → 313
      Transthyretin; HIUase/Transthyretin family
      pfam09349
      Location:55 → 154
      OHCU_decarbox; OHCU decarboxylase

    3. XM_015775049.3 → XP_015630535.1  uric acid degradation bifunctional protein TTL isoform X3

      UniProtKB/TrEMBL
      B8AQM6, Q10KB0, Q75LS2
      Conserved Domains (2) summary
      pfam00576
      Location:190 → 308
      Transthyretin; HIUase/Transthyretin family
      pfam09349
      Location:55 → 154
      OHCU_decarbox; OHCU decarboxylase
    Nucleotide Protein
    Heading Accession and Version

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