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    LOC4331603 zinc finger CCCH domain-containing protein 48 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331603, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331603
    Gene description
    zinc finger CCCH domain-containing protein 48
    Locus tag
    OSNPB_030145600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331603 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2537692..2539281, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2528857..2530443, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene beta-glucuronosyltransferase GlcAT14A-like Neighboring gene uncharacterized LOC4331602 Neighboring gene uncharacterized LOC4331604 Neighboring gene uncharacterized LOC136355568

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 48
    Names
    Os03g0145600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2537692..2539281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773831.3 → XP_015629317.1  zinc finger CCCH domain-containing protein 48

      UniProtKB/TrEMBL
      A0A5S6R8J1, A2XCG3, A3AE27, Q8H033, Q947X5
      Conserved Domains (3) summary
      sd00039
      Location:134 → 173
      7WD40; WD40 repeat [structural motif]
      pfam15663
      Location:34 → 52
      zf-CCCH_3; Zinc-finger containing family
      cl29593
      Location:124 → 410
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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