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    LOC4352386 uncharacterized LOC4352386 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352386, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4352386
    Gene description
    uncharacterized LOC4352386
    Locus tag
    OSNPB_120527800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 15.7), leaves after flowering (RPKM 12.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (21477907..21485700, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (20806091..20813985, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene putative F-box/FBD/LRR-repeat protein At4g03220 Neighboring gene putative receptor protein kinase ZmPK1 Neighboring gene pentatricopeptide repeat-containing protein At4g02820, mitochondrial Neighboring gene uncharacterized LOC4352388

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4352386
    Names
    Os12g0527800
    putative protein-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      21477907..21485700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765057.3 → XP_015620543.1  uncharacterized protein LOC4352386 isoform X1

      UniProtKB/TrEMBL
      Q0IMY7, Q2QPI8
      Conserved Domains (2) summary
      cd15489
      Location:137 → 190
      PHD_SF; PHD finger superfamily
      cl22851
      Location:275 → 329
      PHD_SF; PHD finger superfamily

    2. XM_026022200.2 → XP_025877985.1  uncharacterized protein LOC4352386 isoform X2

      UniProtKB/TrEMBL
      Q0IMY7, Q2QPI8
      Conserved Domains (2) summary
      cd15489
      Location:49 → 102
      PHD_SF; PHD finger superfamily
      cl22851
      Location:187 → 241
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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