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    LOC4350667 aminopeptidase P1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350667, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350667
    Gene description
    aminopeptidase P1
    Locus tag
    OSNPB_110540100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 40.2), mature seeds (RPKM 4.1) and 2 other tissues See more
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    Genomic context

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    See LOC4350667 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (21670781..21682179, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (19723036..19734474, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene F-box protein At5g03100 Neighboring gene aminopeptidase P1 Neighboring gene UPF0481 protein At3g47200 Neighboring gene UPF0481 protein At3g47200-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloaminopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aminopeptidase P1
    Names
    Os11g0540100
    probable Xaa-Pro aminopeptidase P

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      21670781..21682179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761503.3 → XP_015616989.1  aminopeptidase P1

      UniProtKB/TrEMBL
      A0A0P0Y2Z9, Q0ISB4, Q2R329
      Conserved Domains (5) summary
      COG0006
      Location:306 → 571
      PepP; Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
      cd01085
      Location:334 → 579
      APP; X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, ...
      pfam01321
      Location:11 → 153
      Creatinase_N; Creatinase/Prolidase N-terminal domain
      pfam16188
      Location:582 → 642
      Peptidase_M24_C; C-terminal region of peptidase_M24
      pfam16189
      Location:163 → 331
      Creatinase_N_2; Creatinase/Prolidase N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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