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    LOC4340252 probable LRR receptor-like serine/threonine-protein kinase At1g56130 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340252, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4340252
    Gene description
    probable LRR receptor-like serine/threonine-protein kinase At1g56130
    Locus tag
    OSNPB_060167500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 24.3), leaves after flowering (RPKM 15.3) and 6 other tissues See more
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    Genomic context

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    See LOC4340252 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3571399..3581330)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3408656..3418602)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL46 Neighboring gene dehydrodolichyl diphosphate synthase CPT3 Neighboring gene proteasome subunit alpha type-4-2-like Neighboring gene uncharacterized LOC107277937

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable LRR receptor-like serine/threonine-protein kinase At1g56130
    Names
    OSJNBa0033B09.6-1
    Os06g0167500
    P0680A03.27-1
    receptor-like protein kinase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421230.1 → NP_001408159.1  probable LRR receptor-like serine/threonine-protein kinase At1g56130

      Status: VALIDATED

      Source sequence(s)
      AK069490, AU058059, CB675341
      UniProtKB/TrEMBL
      B8B391, Q5VRG4, Q5WAB0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      3571399..3581330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788449.3 → XP_015643935.1  probable LRR receptor-like serine/threonine-protein kinase At1g56130 isoform X1

      UniProtKB/TrEMBL
      B8B391
      Conserved Domains (3) summary
      sd00033
      Location:187 → 210
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:437 → 615
      Malectin; Di-glucose binding within endoplasmic reticulum
      pfam13855
      Location:185 → 244
      LRR_8; Leucine rich repeat

    2. XM_015788451.3 → XP_015643937.1  probable LRR receptor-like serine/threonine-protein kinase At1g56130 isoform X2

      UniProtKB/TrEMBL
      B8B391
      Conserved Domains (3) summary
      PLN00113
      Location:177 → 371
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:187 → 210
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:417 → 595
      Malectin; Di-glucose binding within endoplasmic reticulum
    Nucleotide Protein
    Heading Accession and Version

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