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    LOC4337714 long chain acyl-CoA synthetase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337714, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337714
    Gene description
    long chain acyl-CoA synthetase 1
    Locus tag
    OSNPB_050132100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 115.5), flower buds (RPKM 52.1) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (1880830..1887152, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (1866991..1873439, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 40 member 3, chloroplastic Neighboring gene uncharacterized LOC9270212 Neighboring gene pentatricopeptide repeat-containing protein At3g48810-like Neighboring gene uncharacterized LOC4337713 Neighboring gene protein AGENET DOMAIN (AGD)-CONTAINING P1 Neighboring gene protein EMBRYO SAC DEVELOPMENT ARREST 30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables long-chain fatty acid-CoA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cutin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wax biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    long chain acyl-CoA synthetase 1
    Names
    Os05g0132100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      1880830..1887152 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784386.3 → XP_015639872.1  long chain acyl-CoA synthetase 1

      UniProtKB/TrEMBL
      A0A0N7KK36, B8AXM5, B9FGV9, Q0DL03
      Conserved Domains (1) summary
      PLN02430
      Location:6 → 664
      PLN02430; long-chain-fatty-acid-CoA ligase

    2. XM_015784385.3 → XP_015639871.1  long chain acyl-CoA synthetase 1

      UniProtKB/TrEMBL
      A0A0N7KK36, B8AXM5, B9FGV9, Q0DL03
      Conserved Domains (1) summary
      PLN02430
      Location:6 → 664
      PLN02430; long-chain-fatty-acid-CoA ligase
    Nucleotide Protein
    Heading Accession and Version

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