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    LOC4334700 serine/threonine-protein phosphatase BSL1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334700, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4334700
    Gene description
    serine/threonine-protein phosphatase BSL1
    Locus tag
    OSNPB_030835800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GPA3; OsJ_13268
    Expression
    Ubiquitous expression in roots before flowering (RPKM 16.2), roots after flowering (RPKM 14.2) and 6 other tissues See more
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    Genomic context

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    See LOC4334700 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36088084..36094184)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35115270..35121329)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA-binding domain-containing protein 6-like Neighboring gene 26.7 kDa heat shock protein, chloroplastic-like Neighboring gene ferredoxin-3, chloroplastic Neighboring gene actin-3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein GLUTELIN PRECURSOR ACCUMULATION 3
    Names
    LOC_Os03g61950
    Protein GLUTELIN PRECURSOR ACCUMULATION 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418988.1 → NP_001405917.1  protein GLUTELIN PRECURSOR ACCUMULATION 3

      Status: VALIDATED

      Source sequence(s)
      AK070689, CA999825, CB682870, CI576391, CV734001
      UniProtKB/Swiss-Prot
      Q10AZ7, Q75LJ6
      UniProtKB/TrEMBL
      B8AMT6

    RNA

    1. NR_184999.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK102903, CB682870, CI576391, CV734001

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36088084..36094184
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774273.3 → XP_015629759.1  protein GLUTELIN PRECURSOR ACCUMULATION 3 isoform X1

      UniProtKB/Swiss-Prot
      Q10AZ7, Q75LJ6
      UniProtKB/TrEMBL
      B8AMT6
      Conserved Domains (3) summary
      PLN02153
      Location:75 → 317
      PLN02153; epithiospecifier protein
      sd00038
      Location:28 → 81
      Kelch; KELCH repeat [structural motif]
      pfam13418
      Location:27 → 66
      Kelch_4; Galactose oxidase, central domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10AZ7.1 GenPept UniProtKB/Swiss-Prot:Q10AZ7

    Gene LinkOut

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    Research Materials