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    LOC4333017 serine/threonine-protein kinase SAPK1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333017, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333017
    Gene description
    serine/threonine-protein kinase SAPK1-like
    Locus tag
    OSNPB_030390200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SAPK1; OsSAPK1; OsJ_11114
    Expression
    Broad expression in mature seeds (RPKM 61.3), leaves before flowering (RPKM 13.7) and 6 other tissues See more
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    Genomic context

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    See LOC4333017 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15980650..15985006, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15628250..15632498, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene lysine-specific demethylase JMJ21 Neighboring gene small ribosomal subunit protein eS6 Neighboring gene cytochrome c oxidase subunit 6b-1 Neighboring gene histone H3.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice. Lou D, et al. BMC Plant Biol, 2018 Sep 20. PMID 30236054, Free PMC Article
    2. Differential activation of the rice sucrose nonfermenting1-related protein kinase2 family by hyperosmotic stress and abscisic acid. Kobayashi Y, et al. Plant Cell, 2004 May. PMID 15084714, Free PMC Article
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SAPK1 and SAPK2 may function collaboratively as positive regulators of salt stress tolerance at the germination and seedling stages in rice.
      Title: The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase SAPK1
    Names
    LOC_Os03g27280
    OOSJNBa0017N12.8
    Osmotic stress/abscisic acid-activated protein kinase 1
    stress-activated protein kinase 1
    NP_001389097.1
    XP_015633076.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402168.1 → NP_001389097.1  serine/threonine-protein kinase SAPK1

      Status: VALIDATED

      Source sequence(s)
      CB643708, CB643709, CI043271, CI396001, CI741812
      UniProtKB/Swiss-Prot
      Q10KB6, Q75LR7
      UniProtKB/TrEMBL
      B8AQM4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      15980650..15985006 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777590.3 → XP_015633076.1  serine/threonine-protein kinase SAPK1 isoform X1

      Conserved Domains (2) summary
      smart00220
      Location:1 → 184
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:1 → 183
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75LR7.1 GenPept UniProtKB/Swiss-Prot:Q75LR7

    Gene LinkOut

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    Research Materials